Volume 6; Issue 4 Suppleme

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BMC Bioinformatics
Volume 6; Issue 4 Suppleme

BMC Bioinformatics

Volume 6; Issue 4 Suppleme

1

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society

Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 191 KB

english, 2005

2

Modelling the interaction of steroid receptors with endocrine disrupting chemicals

Pasqualina D'Ursi, Erika Salvi, Paola Fossa, Luciano Milanesi, Ermanna Rovida

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 756 KB

english, 2005

3

A quantization method based on threshold optimization for microarray short time series

Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna Toffolo, Sreekumaran K Nair, Zlatko Trajanoski, Claudio Cobelli

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

4

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

Piero Fariselli, Pier Luigi Martelli, Rita Casadio

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 267 KB

english, 2005

5

A neural strategy for the inference of SH3 domain-peptide interaction specificity

Enrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 229 KB

english, 2005

6

Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control

Giacomo Finocchiaro, Francesco Mancuso, Heiko Muller

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 554 KB

english, 2005

7

-In silicofunctional characterization of a double histone fold domain from theHeliothis zeavirus 1

Claudio Greco, Piercarlo Fantucci, Luca De Gioia

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.67 MB

english, 2005

8

ESTree db: a Tool for Peach Functional Genomics

Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Alessandra Stella, Luciano Milanesi, Carlo Pozzi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 469 KB

english, 2005

9

Browsing Isolated Population Data

Gianmaria Mancosu, Massimiliano Cosso, Francesca Marras, Cesare Cappio Borlino, Giuseppe Ledda, Teresa Manias, Mauro Adamo, Donatella Serra, Paola Melis, Mario Pirastu

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 225 KB

english, 2005

10

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists

Marco Masseroli, Osvaldo Galati, Mauro Manzotti, Karina Gibert, Francesco Pinciroli

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 497 KB

english, 2005

11

High performance workflow implementation for protein surface characterization using grid technology

Ivan Merelli, Giulia Morra, Daniele D'Agostino, Andrea Clematis, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1018 KB

english, 2005

12

Regularized Least Squares Cancer Classifiers from DNA microarray data

Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 591 KB

english, 2005

13

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity

Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1005 KB

english, 2005

14

HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

Maria Persico, Arnaud Ceol, Caius Gavrila, Robert Hoffmann, Arnaldo Florio, Gianni Cesareni

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 738 KB

english, 2005

15

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions betweenC. elegansandC. briggsae

Davide Rambaldi, Alessandro Guffanti, Paolo Morandi, Giuseppe Cassata

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 439 KB

english, 2005

16

Improving interoperability between microbial information and sequence databases

Paolo Romano, Peter Dawyndt, Francesca Piersigilli, Jean Swings

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 211 KB

english, 2005

17

Web services and workflow management for biological resources

Paolo Romano, Domenico Marra, Luciano Milanesi

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

18

A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure

Giuliano Armano, Gianmaria Mancosu, Luciano Milanesi, Alessandro Orro, Massimiliano Saba, Eloisa Vargiu

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 256 KB

english, 2005

19

HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research

Marcella Attimonelli, Matteo Accetturo, Monica Santamaria, Daniela Lascaro, Gaetano Scioscia, Graziano Pappadà, Luigi Russo, Luigi Zanchetta, Mila Tommaseo-Ponzetta

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.65 MB

english, 2005

20

Query3d: a new method for high-throughput analysis of functional residues in protein structures

Gabriele Ausiello, Allegra Via, Manuela Helmer-Citterich

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 225 KB

english, 2005

21

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management

Sarah Burgarella, Dario Cattaneo, Francesco Pinciroli, Marco Masseroli

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 309 KB

english, 2005

22

An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention

Federica Cavallo, Annalisa Astolfi, Manuela Iezzi, Francesca Cordero, Pier-Luigi Lollini, Guido Forni, Raffaele Calogero

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1018 KB

english, 2005

23

Secondary structure assignment that accurately reflects physical and evolutionary characteristics

Maria Vittoria Cubellis, Fabien Cailliez, Simon C Lovell

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 302 KB

english, 2005

24

ParPEST: a pipeline for EST data analysis based on parallel computing

Nunzio D'Agostino, Mario Aversano, Maria Luisa Chiusano

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 461 KB

english, 2005

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